PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031882
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 286aa    MW: 31567.3 Da    PI: 9.8431
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031882genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.33e-067496123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C++C++ F r  nL+ H r+H
  Lus10031882 74 YVCEICNQGFQRDQNLQMHRRRH 96
                 9*********************9 PP

2zf-C2H216.72e-05151173123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C +C+k +  +s++k H++t+
  Lus10031882 151 WVCDKCNKGYAVQSDYKAHLKTC 173
                  58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.0E-57396IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.2E-67396No hitNo description
PROSITE profilePS5015710.977496IPR007087Zinc finger, C2H2
SMARTSM003550.00527496IPR015880Zinc finger, C2H2-like
PfamPF128740.0137492No hitNo description
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
SMARTSM00355240115145IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.9E-5142172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.2E-6146171No hitNo description
SMARTSM0035549151178IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MFCSNKNPSS SPPSDPFSSS SLDNNNCHES SSAAAASSSA AKRKRRPAGT PGGTDPDAEV  60
VSLSPRTLME SDRYVCEICN QGFQRDQNLQ MHRRRHKVPW KLLKRESPVV KKRVFVCPES  120
SCLHHDPCHA LGDLVGIKKH FRRKHSNQKQ WVCDKCNKGY AVQSDYKAHL KTCGTRGHSC  180
DCGRVFSRVE SFIEHQDACT MGRHSHSPNF QQQQQPTACL SRTASDPSPT ALADSRAIST  240
PASSTTTTSS ASSSTARPPP TTRWWSRCHL VIHVIAHHNN GRPRL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083211.11e-122PREDICTED: protein SHOOT GRAVITROPISM 5-like
RefseqXP_003528998.11e-121PREDICTED: protein SHOOT GRAVITROPISM 5
SwissprotF4IPE31e-109IDD15_ARATH; Protein SHOOT GRAVITROPISM 5
TrEMBLA0A0B2QZ381e-121A0A0B2QZ38_GLYSO; Zinc finger protein MAGPIE
STRINGGLYMA07G12170.11e-121(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17693289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-106C2H2-like zinc finger protein